patchelf: upgrade 0.12 -> 0.13

(From OE-Core rev: 9fdfa49ac11eff7215fab8540114535b2c652b83)

Signed-off-by: Alexander Kanavin <alex.kanavin@gmail.com>
Signed-off-by: Richard Purdie <richard.purdie@linuxfoundation.org>

meta/recipes-devtools/patchelf/patchelf/6edec83653ce1b5fc201ff6db93b966394766814.patch

@@ -1,44 +0,0 @@
-From 6edec83653ce1b5fc201ff6db93b966394766814 Mon Sep 17 00:00:00 2001
-From: rmnull <rmnull@users.noreply.github.com>
-Date: Tue, 18 Aug 2020 20:22:52 +0530
-Subject: [PATCH] mark phdrs synced with sections, avoid rechecking it when
- syncing note sections to segments.
-
-This also serves as a bug fix when a previously synced note segment
-overlaps with another section and creates a false alarm.
-
-Upstream-Status: Backport
----
- src/patchelf.cc | 5 ++++-
- 1 file changed, 4 insertions(+), 1 deletion(-)
-
-diff --git a/src/patchelf.cc b/src/patchelf.cc
-index 05ec793..622f0b6 100644
---- a/src/patchelf.cc
-+++ b/src/patchelf.cc
-@@ -669,6 +669,7 @@ void ElfFile<ElfFileParamNames>::writeReplacedSections(Elf_Off & curOff,
-             memset(contents + rdi(shdr.sh_offset), 'X', rdi(shdr.sh_size));
-     }
- 
-+    std::set<unsigned int> noted_phdrs = {};
-     for (auto & i : replacedSections) {
-         std::string sectionName = i.first;
-         auto & shdr = findSection(sectionName);
-@@ -721,7 +722,7 @@ void ElfFile<ElfFileParamNames>::writeReplacedSections(Elf_Off & curOff,
-                 shdr.sh_addralign = orig_shdr.sh_addralign;
- 
-             for (unsigned int j = 0; j < phdrs.size(); ++j)
--                if (rdi(phdrs[j].p_type) == PT_NOTE) {
-+                if (rdi(phdrs[j].p_type) == PT_NOTE && noted_phdrs.find(j) == noted_phdrs.end()) {
-                     Elf_Off p_start = rdi(phdrs[j].p_offset);
-                     Elf_Off p_end = p_start + rdi(phdrs[j].p_filesz);
-                     Elf_Off s_start = rdi(orig_shdr.sh_offset);
-@@ -739,6 +740,8 @@ void ElfFile<ElfFileParamNames>::writeReplacedSections(Elf_Off & curOff,
-                     phdrs[j].p_offset = shdr.sh_offset;
-                     phdrs[j].p_vaddr = phdrs[j].p_paddr = shdr.sh_addr;
-                     phdrs[j].p_filesz = phdrs[j].p_memsz = shdr.sh_size;
-+
-+                    noted_phdrs.insert(j);
-                 }
-         }
- 

meta/recipes-devtools/patchelf/patchelf/alignmentfix.patch

@@ -1,44 +0,0 @@
-If a binary has multiple SHT_NOTE sections and corresponding PT_NOTE
-headers, we can see the error:
-
-patchelf: cannot normalize PT_NOTE segment: non-contiguous SHT_NOTE sections
-
-if the SHT_NOTE sections aren't sized to end on aligned boundaries. An example
-would be a binary with:
-
-  [ 2] .note.ABI-tag     NOTE             00000000000002f4  000002f4
-       0000000000000020  0000000000000000   A       0     0     4
-  [ 3] .note.gnu.propert NOTE             0000000000000318  00000318
-       0000000000000030  0000000000000000   A       0     0     8
-  [ 4] .note.gnu.build-i NOTE             0000000000000348  00000348
-       0000000000000024  0000000000000000   A       0     0     4
-
-  NOTE           0x0000000000000318 0x0000000000000318 0x0000000000000318
-                 0x0000000000000030 0x0000000000000030  R      0x8
-  NOTE           0x00000000000002f4 0x00000000000002f4 0x00000000000002f4
-                 0x0000000000000078 0x0000000000000074  R      0x4
-
-since the PT_NOTE section at 2f4 covers [2] and [3] but the code
-calclates curr_off should be 314, not the 318 in the binary. This
-is an alignment issue.
-
-To fix this, we need to round curr_off to the next section alignment.
-
-Upstream-Status: Submitted [https://github.com/NixOS/patchelf/pull/274]
-Signed-off-by: Richard Purdie <richard.purdie@linuxfoundation.org>
-
-Index: git/src/patchelf.cc
-===================================================================
---- git.orig/src/patchelf.cc
-+++ git/src/patchelf.cc
-@@ -1010,8 +1010,9 @@ void ElfFile<ElfFileParamNames>::normali
-             size_t size = 0;
-             for (const auto & shdr : shdrs) {
-                 if (rdi(shdr.sh_type) != SHT_NOTE) continue;
--                if (rdi(shdr.sh_offset) != curr_off) continue;
-+                if (rdi(shdr.sh_offset) != roundUp(curr_off, rdi(shdr.sh_addralign))) continue;
-                 size = rdi(shdr.sh_size);
-+                curr_off = roundUp(curr_off, rdi(shdr.sh_addralign));
-                 break;
-             }
-             if (size == 0)

meta/recipes-devtools/patchelf/patchelf/handle-read-only-files.patch

@@ -1,4 +1,4 @@
-From 7f1fd10cfebd5ea2f3e1938abe1bd1c4828164a7 Mon Sep 17 00:00:00 2001
+From 682fb48c137b687477008b68863c2a0b73ed47d1 Mon Sep 17 00:00:00 2001
 From: Fabio Berton <fabio.berton@ossystems.com.br>
 Date: Fri, 9 Sep 2016 16:00:42 -0300
 Subject: [PATCH] handle read-only files
@@ -14,13 +14,13 @@ Signed-off-by: Fabio Berton <fabio.berton@ossystems.com.br>
  src/patchelf.cc | 16 +++++++++++++++-
  1 file changed, 15 insertions(+), 1 deletion(-)
 
-Index: git/src/patchelf.cc
+diff --git a/src/patchelf.cc b/src/patchelf.cc
-===================================================================
+index fd1e7b7..a941da1 100644
---- git.orig/src/patchelf.cc
+--- a/src/patchelf.cc
-+++ git/src/patchelf.cc
++++ b/src/patchelf.cc
-@@ -499,9 +499,19 @@ void ElfFile<ElfFileParamNames>::sortShd
+@@ -527,9 +527,19 @@ void ElfFile<ElfFileParamNames>::sortShdrs()
  
- static void writeFile(std::string fileName, FileContents contents)
+ static void writeFile(const std::string & fileName, const FileContents & contents)
  {
 +    struct stat st;
 +    int fd;
@@ -39,7 +39,7 @@ Index: git/src/patchelf.cc
      if (fd == -1)
          error("open");
  
-@@ -515,6 +525,10 @@ static void writeFile(std::string fileNa
+@@ -543,6 +553,10 @@ static void writeFile(const std::string & fileName, const FileContents & content
  
      if (close(fd) != 0)
          error("close");

meta/recipes-devtools/patchelf/patchelf_0.13.bb

@@ -6,10 +6,8 @@ LICENSE = "GPLv3"
 
 SRC_URI = "git://github.com/NixOS/patchelf;protocol=https \
            file://handle-read-only-files.patch \
-           file://6edec83653ce1b5fc201ff6db93b966394766814.patch \
-           file://alignmentfix.patch \
            "
-SRCREV = "8d3a16e97294e3c5521c61b4c8835499c9918264"
+SRCREV = "a949ff23315bbb5863627c4655fe216ecbf341a2"
 
 S = "${WORKDIR}/git"