Ryan Gonzalez 19a705f80d Split reflists to share their contents across snapshots
In current aptly, each repository and snapshot has its own reflist in
the database. This brings a few problems with it:

- Given a sufficiently large repositories and snapshots, these lists can
  get enormous, reaching >1MB. This is a problem for LevelDB's overall
  performance, as it tends to prefer values around the confiruged block
  size (defaults to just 4KiB).
- When you take these large repositories and snapshot them, you have a
  full, new copy of the reflist, even if only a few packages changed.
  This means that having a lot of snapshots with a few changes causes
  the database to basically be full of largely duplicate reflists.
- All the duplication also means that many of the same refs are being
  loaded repeatedly, which can cause some slowdown but, more notably,
  eats up huge amounts of memory.
- Adding on more and more new repositories and snapshots will cause the
  time and memory spent on things like cleanup and publishing to grow
  roughly linearly.

At the core, there are two problems here:

- Reflists get very big because there are just a lot of packages.
- Different reflists can tend to duplicate much of the same contents.

*Split reflists* aim at solving this by separating reflists into 64
*buckets*. Package refs are sorted into individual buckets according to
the following system:

- Take the first 3 letters of the package name, after dropping a `lib`
  prefix. (Using only the first 3 letters will cause packages with
  similar prefixes to end up in the same bucket, under the assumption
  that packages with similar names tend to be updated together.)
- Take the 64-bit xxhash of these letters. (xxhash was chosen because it
  relatively good distribution across the individual bits, which is
  important for the next step.)
- Use the first 6 bits of the hash (range [0:63]) as an index into the
  buckets.

Once refs are placed in buckets, a sha256 digest of all the refs in the
bucket is taken. These buckets are then stored in the database, split
into roughly block-sized segments, and all the repositories and
snapshots simply store an array of bucket digests.

This approach means that *repositories and snapshots can share their
reflist buckets*. If a snapshot is taken of a repository, it will have
the same contents, so its split reflist will point to the same buckets
as the base repository, and only one copy of each bucket is stored in
the database. When some packages in the repository change, only the
buckets containing those packages will be modified; all the other
buckets will remain unchanged, and thus their contents will still be
shared. Later on, when these reflists are loaded, each bucket is only
loaded once, short-cutting loaded many megabytes of data. In effect,
split reflists are essentially copy-on-write, with only the changed
buckets stored individually.

Changing the disk format means that a migration needs to take place, so
that task is moved into the database cleanup step, which will migrate
reflists over to split reflists, as well as delete any unused reflist
buckets.

All the reflist tests are also changed to additionally test out split
reflists; although the internal logic is all shared (since buckets are,
themselves, just normal reflists), some special additions are needed to
have native versions of the various reflist helper methods.

In our tests, we've observed the following improvements:

- Memory usage during publish and database cleanup, with
  `GOMEMLIMIT=2GiB`, goes down from ~3.2GiB (larger than the memory
  limit!) to ~0.7GiB, a decrease of ~4.5x.
- Database size decreases from 1.3GB to 367MB.

*In my local tests*, publish times had also decreased down to mere
seconds but the same effect wasn't observed on the server, with the
times staying around the same. My suspicions are that this is due to I/O
performance: my local system is an M1 MBP, which almost certainly has
much faster disk speeds than our DigitalOcean block volumes. Split
reflists include a side effect of requiring more random accesses from
reading all the buckets by their keys, so if your random I/O
performance is slower, it might cancel out the benefits. That being
said, even in that case, the memory usage and database size advantages
still persist.

Signed-off-by: Ryan Gonzalez <ryan.gonzalez@collabora.com>
2025-02-15 23:49:21 +01:00
2025-02-15 22:25:56 +01:00
2025-01-11 23:18:50 +01:00
2025-02-15 16:17:37 +01:00
2025-01-11 23:18:50 +01:00
2025-01-12 00:05:00 +01:00
2025-01-11 21:33:40 +01:00
2025-02-15 22:25:56 +01:00

.. image:: https://github.com/aptly-dev/aptly/actions/workflows/ci.yml/badge.svg
    :target: https://github.com/aptly-dev/aptly/actions

.. image:: https://codecov.io/gh/aptly-dev/aptly/branch/master/graph/badge.svg
    :target: https://codecov.io/gh/aptly-dev/aptly

.. image:: https://badges.gitter.im/Join Chat.svg
    :target: https://matrix.to/#/#aptly:gitter.im

.. image:: https://goreportcard.com/badge/github.com/aptly-dev/aptly
    :target: https://goreportcard.com/report/aptly-dev/aptly

aptly
=====

Aptly is a swiss army knife for Debian repository management.

.. image:: http://www.aptly.info/img/aptly_logo.png
    :target: http://www.aptly.info/

Documentation is available at `http://www.aptly.info/ <http://www.aptly.info/>`_. For support please use
open `issues <https://github.com/aptly-dev/aptly/issues>`_ or `discussions <https://github.com/aptly-dev/aptly/discussions>`_.

Aptly features:

* make mirrors of remote Debian/Ubuntu repositories, limiting by components/architectures
* take snapshots of mirrors at any point in time, fixing state of repository at some moment of time
* publish snapshot as Debian repository, ready to be consumed by apt
* controlled update of one or more packages in snapshot from upstream mirror, tracking dependencies
* merge two or more snapshots into one
* filter repository by search query, pulling dependencies when required
* publish self-made packages as Debian repositories
* REST API for remote access

Any contributions are welcome! Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_.

Installation
=============

Aptly can be installed on several operating systems.

Debian / Ubuntu
----------------

Aptly is provided in the following debian packages:

* **aptly**: Includes the main Aptly binary, man pages, and shell completions
* **aptly-api**: A systemd service for the REST API, using the global /etc/aptly.conf
* **aptly-dbg**: Debug symbols for troubleshooting

The packages can be installed on official `Debian <https://packages.debian.org/search?keywords=aptly>`_ and `Ubuntu <https://packages.ubuntu.com/search?keywords=aptly>`_ distributions.

Upstream Debian Packages
~~~~~~~~~~~~~~~~~~~~~~~~~

If a newer version (not available in Debian/Ubuntu) of aptly is required, upstream debian packages (built from git tags) can be installed as follows:

Install the following APT key (as root)::

    wget -O /etc/apt/keyrings/aptly.asc https://www.aptly.info/pubkey.txt

Define Release APT sources in ``/etc/apt/sources.list.d/aptly.list``::

    deb [signed-by=/etc/apt/keyrings/aptly.asc] http://repo.aptly.info/release DIST main

Where DIST is one of: ``buster``, ``bullseye``, ``bookworm``, ``focal``, ``jammy``, ``noble``

Install aptly packages::

    apt-get update
    apt-get install aptly
    apt-get install aptly-api  # REST API systemd service

CI Builds
~~~~~~~~~~

For testing new features or bugfixes, recent builds are available as CI builds (built from master, may be unstable!) and can be installed as follows:

Define CI APT sources in ``/etc/apt/sources.list.d/aptly-ci.list``::

    deb [signed-by=/etc/apt/keyrings/aptly.asc] http://repo.aptly.info/ci DIST main

Where DIST is one of: ``buster``, ``bullseye``, ``bookworm``, ``focal``, ``jammy``, ``noble``

Note: same gpg key is used as for the Upstream Debian Packages.

Other Operating Systems
------------------------

Binary executables (depends almost only on libc) are available on `GitHub Releases <https://github.com/aptly-dev/aptly/releases>`_ for:

- macOS / darwin (amd64, arm64)
- FreeBSD (amd64, arm64, 386, arm)
- Generic Linux (amd64, arm64, 386, arm)

Integrations
=============

Vagrant:

-   `Vagrant configuration <https://github.com/sepulworld/aptly-vagrant>`_ by
    Zane Williamson, allowing to bring two virtual servers, one with aptly installed
    and another one set up to install packages from repository published by aptly

Docker:

-    `Docker container <https://github.com/mikepurvis/aptly-docker>`_ with aptly inside by Mike Purvis
-    `Docker container <https://github.com/urpylka/docker-aptly>`_ with aptly and nginx by Artem Smirnov

With configuration management systems:

-   `Chef cookbook <https://github.com/hw-cookbooks/aptly>`_ by Aaron Baer
    (Heavy Water Operations, LLC)
-   `Puppet module <https://github.com/alphagov/puppet-aptly>`_ by
    Government Digital Services
-   `Puppet module <https://github.com/tubemogul/puppet-aptly>`_ by
    TubeMogul
-   `SaltStack Formula <https://github.com/saltstack-formulas/aptly-formula>`_ by
    Forrest Alvarez and Brian Jackson
-   `Ansible role <https://github.com/aioue/ansible-role-aptly>`_ by Tom Paine

CLI for aptly API:

-   `Ruby aptly CLI/library <https://github.com/sepulworld/aptly_cli>`_ by Zane Williamson
-   `Python aptly CLI (good for CI) <https://github.com/TimSusa/aptly_api_cli>`_ by Tim Susa

GUI for aptly API:

-   `Python aptly GUI (via pyqt5) <https://github.com/chnyda/python-aptly-gui>`_ by Cedric Hnyda

Scala sbt:

-   `sbt aptly plugin <https://github.com/amalakar/sbt-aptly>`_ by Arup Malakar

Molior:

-   `Molior Debian Build System <https://github.com/molior-dbs/molior>`_ by André Roth
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